How to cite

The ReproGenomics Viewer Citation Guidelines

The ReproGenomics Viewer database contains a wealth of processed sequencing datasets published in the field of reproductive biology including genetic, genomic, transcriptomic, cistromic and epigenomic data. In addition its web interface provides data access via several visualization tools. As is common practice in scientific research, cite the resources you are using. The team behind this resource has invested considerable time, resources, and effort into collecting, curating, processing, developing, and maintaining the ReproGenomics Viewer resource you are using. They deserve credit for their work.

If you use data or services from The ReproGenomics Viewer, please cite both publications:

  • Darde TA, Sallou O, Becker E, Evrard B, Monjeaud C, Le Bras Y, Jégou B, Collin O, Rolland AD, Chalmel F. The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community. Nucleic Acids Res. 2015 Jul 1;43(W1):W109-16. PubMed PMID:25883147
  • Darde TA, Lecluze E, Lardenois A, Stévant I, Alary A, Tüttelmann F, Collin O, Nef S, Jégou B, Rolland AD, Chalmel F.The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community. Bioinformatics. PubMed PMID:30668675

The Reprogenomics Viewer has been cited by:

  • Jégou B, Sankararaman S, Rolland AD, Reich D, Chalmel F. Meiotic Genes Are Enriched in Regions of Reduced Archaic Ancestry. Mol Biol Evol. 2017 Aug 1;34(8):1974-1980. PubMed PMID:28444387.
  • Becker E, Com E, Lavigne R, Guilleux MH, Evrard B, Pineau C, Primig M. The protein expression landscape of mitosis and meiosis in diploid budding yeast. J Proteomics. 2017 Mar 6;156:5-19. PubMed PMID:28057603.
  • Xie B, Horecka J, Chu A, Davis RW, Becker E, Primig M. Ndt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae. RNA Biol. 2016 Sep;13(9):772-82. 0/15476286.2016.1191738. Epub 2016 Jun 30. PubMed PMID:27362276.
  • Borowiec AS, Sion B, Chalmel F, D Rolland A, Lemonnier L, De Clerck T, Bokhobza A, Derouiche S, Dewailly E, Slomianny C, Mauduit C, Benahmed M, Roudbaraki M, Jégou B, Prevarskaya N, Bidaux G. Cold/menthol TRPM8 receptors initiate the cold-shock response and protect germ cells from cold-shock-induced oxidation. FASEB J. 2016 Sep;30(9):3155-70. PubMed PMID:27317670.
  • Chalmel F, Rolland AD. Linking transcriptomics and proteomics in spermatogenesis. Reproduction. 2015 Nov;150(5):R149-57. PubMed PMID:26416010.
  • Stuparevic I, Becker E, Law MJ, Primig M. The histone deacetylase Rpd3/Sin3/Ume6 complex represses an acetate-inducible isoform of VTH2 in fermenting budding yeast cells. FEBS Lett. 2015 Apr 2;589(8):924-32. PubMed PMID:25728275.
  • Zimmermann C, Stévant I, Borel C, Conne B, Pitetti JL, Calvel P, Kaessmann H, Jégou B, Chalmel F, Nef S. Research resource: the dynamic transcriptional profile of sertoli cells during the progression of spermatogenesis. Mol Endocrinol. 2015 Apr;29(4):627-42. PubMed PMID:25710594.
  • Chocu S, Evrard B, Lavigne R, Rolland AD, Aubry F, Jégou B, Chalmel F, Pineau C. Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells. Biol Reprod. 2014 Nov;91(5):123. PubMed PMID:25210130.
  • Chalmel F, Lardenois A, Evrard B, Rolland AD, Sallou O, Dumargne MC, Coiffec I, Collin O, Primig M, Jégou B. High-resolution profiling of novel transcribed regions during rat spermatogenesis. Biol Reprod. 2014 Jul;91(1):5. PubMed PMID:24740603.