Dataset information
Study summary
| Title | A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq. |
|---|---|
| Abstract | Spermatogenesis requires intricate interactions between the germline and somatic cells. Within a given cross section of a seminiferous tubule, multiple germ and somatic cell types co-occur. This cellular heterogeneity has made it difficult to profile distinct cell types at different stages of development. To address this challenge, we collected single-cell RNA sequencing data from ∼35,000 cells from the adult mouse testis and identified all known germ and somatic cells, as well as two unexpected somatic cell types. Our analysis revealed a continuous developmental trajectory of germ cells from spermatogonia to spermatids and identified candidate transcriptional regulators at several transition points during differentiation. Focused analyses delineated four subtypes of spermatogonia and nine subtypes of Sertoli cells; the latter linked to histologically defined developmental stages over the seminiferous epithelial cycle. Overall, this high-resolution cellular atlas represents a community resource and foundation of knowledge to study germ cell development and in vivo gametogenesis. |
| Publication date | 09. 2018 |
Dataset summary
| Name | data genelevel Spermatogonia cells Fig4A |
|---|---|
| Number of sample/cell | 2484 |
| Number of classification | 2 |
| Number of Interogated genes | 28818 |
| Technology | scRNA-Seq |
| Species | Mus musculus |
Classification parameters
Dataset operations
Dataset summary
| Name | data genelevel Spermatogonia cells Fig4A |
|---|---|
| Number of samples/cells | 2484 |
| Number of classification | 2 |
| Number of interrogated genes | 28818 |
| Technology | scRNA-Seq |
| Species | Mus musculus |
Download full dataset
DownloadGene expression table
data genelevel Spermatogonia cells Fig4A - Green et al. 2018, Dev. Cell
Select your visualisation
Select additional tracks to show
Genes selection
Load your gene lists
To save your gene list, you need to be logged in.
Selected genes
Optional: Select one gene to be displayed
Required : Select one gene to be displayed
Optional: Select one or more genes to be displayed
You can add genes to this list by using the input in Genes selection, or by loading a saved gene list.